STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCU68_22195Unannotated protein. (125 aa)    
Predicted Functional Partners:
CCU68_22640
Unannotated protein.
  
 
 0.755
oadA
Unannotated protein.
    
 0.753
CCU68_11640
Unannotated protein.
  
 
 0.721
CCU68_34645
Unannotated protein.
  
 
 0.721
CCU68_29905
Unannotated protein.
  
 
 0.721
metC
Unannotated protein.
   
 
 0.706
CCU68_23915
Unannotated protein.
   
 
 0.706
argA
Unannotated protein.
    
  0.703
CCU68_21555
Unannotated protein.
 
     0.690
nuoC
Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
  
  
 0.669
Your Current Organism:
Pseudomonas gingeri
NCBI taxonomy Id: 707248
Other names: P. gingeri NCPPB 3146 = LMG 5327, Pseudomonas gingeri CFBP 2810, Pseudomonas gingeri LMG 5327, Pseudomonas gingeri LMG 5327 = NCPPB 3146, Pseudomonas gingeri NCPPB 3146, Pseudomonas gingeri NCPPB 3146 = LMG 5327
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