STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS53316.1Putative HTH-type transcriptional regulator. (192 aa)    
Predicted Functional Partners:
hrtA_1
Putative hemin import ATP-binding protein HrtA.
   
 
 0.605
AQS53317.1
Putative transcriptional regulatory protein.
       0.572
AQS53315.1
Putative ABC transporter permease.
  
  
 0.561
smc_1
Chromosome partition protein Smc.
  
  
 0.532
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 
 0.423
pepF1_2
Oligoendopeptidase F, plasmid.
       0.404
Your Current Organism:
Jeotgalibaca dankookensis
NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.