STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdA_2Sensor histidine kinase YpdA. (549 aa)    
Predicted Functional Partners:
AQS53382.1
Putative response regulatory protein.
 
 
 0.995
AQS52593.1
Putative response regulatory protein.
 
 
 0.975
yehU
Sensor histidine kinase YehU.
  
  
 
0.929
potD_1
Spermidine/putrescine-binding periplasmic protein.
 
 
   0.910
lytR_1
Sensory transduction protein LytR.
 
  
 0.874
potH_1
Putrescine transport system permease protein PotH.
 
     0.762
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
       0.541
mglB
D-galactose-binding periplasmic protein.
 
 
 0.514
rbsB_2
Ribose import binding protein RbsB.
  
 
 0.457
rbsB_1
Ribose import binding protein RbsB.
  
 
 0.441
Your Current Organism:
Jeotgalibaca dankookensis
NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.