STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecEFe(3+) dicitrate transport ATP-binding protein FecE. (247 aa)    
Predicted Functional Partners:
mntB
Manganese transport system membrane protein MntB.
 0.999
mntA
Manganese-binding lipoprotein MntA; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.998
znuB
High-affinity zinc uptake system membrane protein ZnuB.
 
 
 0.943
znuA
High-affinity zinc uptake system binding-protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.905
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
    0.849
mntH
Divalent metal cation transporter MntH.
  
  
 0.711
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.685
AQS53909.1
Hypothetical protein.
  
  
 0.545
AQS53510.1
Fatty acid-binding protein.
       0.465
ideR
Iron-dependent repressor IdeR.
  
  
 0.449
Your Current Organism:
Jeotgalibaca dankookensis
NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07
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