STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scdAIron-sulfur cluster repair protein ScdA. (97 aa)    
Predicted Functional Partners:
copZ_3
Copper chaperone CopZ.
 
   
 0.920
cadA_3
Putative cadmium-transporting ATPase.
 
     0.777
copZ_1
Copper chaperone CopZ.
 
   
 0.766
copZ_2
Copper chaperone CopZ.
 
   
 0.712
cadA_2
Putative cadmium-transporting ATPase.
 
     0.592
AQS53530.1
Cyclic AMP receptor protein.
 
  
 0.570
AQS52602.1
Hypothetical protein.
  
     0.479
sppA
Putative signal peptide peptidase SppA.
       0.456
AQS53526.1
Hypothetical protein.
       0.456
AQS54020.1
Putative HTH-type transcriptional regulator.
  
  
 0.400
Your Current Organism:
Jeotgalibaca dankookensis
NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.