STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potBSpermidine/putrescine transport system permease protein PotB. (271 aa)    
Predicted Functional Partners:
ydcV_1
Inner membrane ABC transporter permease protein YdcV.
 
0.998
potD_2
Spermidine/putrescine-binding periplasmic protein.
 
 0.996
potA_1
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 0.995
ydcV_2
Inner membrane ABC transporter permease protein YdcV.
  
 0.977
puuR
HTH-type transcriptional regulator PuuR.
  
    0.758
spuD
Putrescine-binding periplasmic protein SpuD.
 
  
 0.717
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 0.687
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.657
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
  
 0.538
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.462
Your Current Organism:
Jeotgalibaca dankookensis
NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.