gsiA protein (Jeotgalibaca dankookensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gsiA

Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily. (574 aa)

Predicted Functional Partners:

gsiD

0.998

AQS52955.1

0.997

dppB_1

0.984

oppC

0.983

gsiC

0.978

oppD_1

0.958

AQS53688.1

0.948

appA

0.917

dppB_2

0.899

dppE

0.657

Your Current Organism:

Jeotgalibaca dankookensis

NCBI taxonomy Id: 708126
Other names: J. dankookensis, JCM 19215, Jeotgalibaca dankookensis Lee et al. 2014, KCCM 90229, Trichococcus sp. EX-07, strain EX-07

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS52955.1	AQS53688.1	BW727_100562	BW727_101321	Putative peptide transport permease protein.	Hypothetical protein.	0.940
AQS52955.1	appA	BW727_100562	BW727_100563	Putative peptide transport permease protein.	Oligopeptide-binding protein AppA.	0.996
AQS52955.1	dppB_1	BW727_100562	BW727_101323	Putative peptide transport permease protein.	Dipeptide transport system permease protein DppB.	0.987
AQS52955.1	dppB_2	BW727_100562	BW727_101547	Putative peptide transport permease protein.	Dipeptide transport system permease protein DppB.	0.909
AQS52955.1	dppE	BW727_100562	BW727_101548	Putative peptide transport permease protein.	Dipeptide-binding protein DppE.	0.512
AQS52955.1	gsiA	BW727_100562	BW727_101324	Putative peptide transport permease protein.	Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.	0.997
AQS52955.1	gsiC	BW727_100562	BW727_100561	Putative peptide transport permease protein.	Glutathione transport system permease protein GsiC.	0.997
AQS52955.1	gsiD	BW727_100562	BW727_101322	Putative peptide transport permease protein.	Glutathione transport system permease protein GsiD.	0.924
AQS52955.1	oppD_1	BW727_100562	BW727_100559	Putative peptide transport permease protein.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.999
AQS53688.1	AQS52955.1	BW727_101321	BW727_100562	Hypothetical protein.	Putative peptide transport permease protein.	0.940
AQS53688.1	appA	BW727_101321	BW727_100563	Hypothetical protein.	Oligopeptide-binding protein AppA.	0.900
AQS53688.1	dppB_1	BW727_101321	BW727_101323	Hypothetical protein.	Dipeptide transport system permease protein DppB.	0.989
AQS53688.1	dppB_2	BW727_101321	BW727_101547	Hypothetical protein.	Dipeptide transport system permease protein DppB.	0.476
AQS53688.1	gsiA	BW727_101321	BW727_101324	Hypothetical protein.	Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.	0.948
AQS53688.1	gsiC	BW727_101321	BW727_100561	Hypothetical protein.	Glutathione transport system permease protein GsiC.	0.945
AQS53688.1	gsiD	BW727_101321	BW727_101322	Hypothetical protein.	Glutathione transport system permease protein GsiD.	0.992
AQS53688.1	oppC	BW727_101321	BW727_101546	Hypothetical protein.	Oligopeptide transport system permease protein OppC.	0.428
AQS53688.1	oppD_1	BW727_101321	BW727_100559	Hypothetical protein.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.932
appA	AQS52955.1	BW727_100563	BW727_100562	Oligopeptide-binding protein AppA.	Putative peptide transport permease protein.	0.996
appA	AQS53688.1	BW727_100563	BW727_101321	Oligopeptide-binding protein AppA.	Hypothetical protein.	0.900