CCHL11_10152 protein (Colletotrichum chlorophyti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCHL11_10152

Periodic tryptophan protein 2-like protein. (896 aa)

Predicted Functional Partners:

CCHL11_09269

0.999

CCHL11_07692

0.999

CCHL11_05960

0.999

CCHL11_00362

0.999

CCHL11_01710

0.999

CCHL11_02000

0.999

CCHL11_10388

0.999

CCHL11_07255

0.999

CCHL11_03521

0.999

CCHL11_02858

0.999

Your Current Organism:

Colletotrichum chlorophyti

NCBI taxonomy Id: 708187
Other names: C. chlorophyti, Colletotrichum chlorophytumi, IMI 103806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCHL11_00362	CCHL11_01710	A0A1Q8RUX0	A0A1Q8RVZ8	U3 small nucleolar RNA-associated protein 21-like protein.	Putative U3 small nucleolar RNA-associated protein 18.	0.999
CCHL11_00362	CCHL11_02000	A0A1Q8RUX0	A0A1Q8RW21	U3 small nucleolar RNA-associated protein 21-like protein.	Putative WD repeat-containing protein C3D6.12.	0.999
CCHL11_00362	CCHL11_02858	A0A1Q8RUX0	A0A1Q8S111	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 22.	0.999
CCHL11_00362	CCHL11_03521	A0A1Q8RUX0	A0A1Q8S078	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 10.	0.999
CCHL11_00362	CCHL11_05960	A0A1Q8RUX0	A0A1Q8RJL6	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 17.	0.998
CCHL11_00362	CCHL11_07255	A0A1Q8RUX0	A0A1Q8RXF1	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 6.	0.999
CCHL11_00362	CCHL11_07692	A0A1Q8RUX0	A0A1Q8RCK3	U3 small nucleolar RNA-associated protein 21-like protein.	Putative U3 small nucleolar RNA-associated protein 13.	0.999
CCHL11_00362	CCHL11_09269	A0A1Q8RUX0	A0A1Q8RCB2	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 5.	0.999
CCHL11_00362	CCHL11_10152	A0A1Q8RUX0	A0A1Q8RAM3	U3 small nucleolar RNA-associated protein 21-like protein.	Periodic tryptophan protein 2-like protein.	0.999
CCHL11_00362	CCHL11_10388	A0A1Q8RUX0	A0A1Q8RX53	U3 small nucleolar RNA-associated protein 21-like protein.	U3 small nucleolar RNA-associated protein 4.	0.999
CCHL11_01710	CCHL11_00362	A0A1Q8RVZ8	A0A1Q8RUX0	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 21-like protein.	0.999
CCHL11_01710	CCHL11_02000	A0A1Q8RVZ8	A0A1Q8RW21	Putative U3 small nucleolar RNA-associated protein 18.	Putative WD repeat-containing protein C3D6.12.	0.999
CCHL11_01710	CCHL11_02858	A0A1Q8RVZ8	A0A1Q8S111	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 22.	0.998
CCHL11_01710	CCHL11_03521	A0A1Q8RVZ8	A0A1Q8S078	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 10.	0.999
CCHL11_01710	CCHL11_05960	A0A1Q8RVZ8	A0A1Q8RJL6	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 17.	0.998
CCHL11_01710	CCHL11_07255	A0A1Q8RVZ8	A0A1Q8RXF1	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 6.	0.999
CCHL11_01710	CCHL11_07692	A0A1Q8RVZ8	A0A1Q8RCK3	Putative U3 small nucleolar RNA-associated protein 18.	Putative U3 small nucleolar RNA-associated protein 13.	0.999
CCHL11_01710	CCHL11_09269	A0A1Q8RVZ8	A0A1Q8RCB2	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 5.	0.999
CCHL11_01710	CCHL11_10152	A0A1Q8RVZ8	A0A1Q8RAM3	Putative U3 small nucleolar RNA-associated protein 18.	Periodic tryptophan protein 2-like protein.	0.999
CCHL11_01710	CCHL11_10388	A0A1Q8RVZ8	A0A1Q8RX53	Putative U3 small nucleolar RNA-associated protein 18.	U3 small nucleolar RNA-associated protein 4.	0.999