STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCHL11_08766Transcription initiation factor TFIID subunit 14. (263 aa)    
Predicted Functional Partners:
CCHL11_02920
Transcription initiation factor IIF subunit beta.
   
 0.971
CCHL11_07300
Transcription initiation factor IIF subunit alpha.
   
 0.969
CCHL11_01433
DNA-directed RNA polymerase II subunit RPB3.
   
 0.955
CCHL11_09111
DNA-directed RNA polymerase II subunit RPB9; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.947
CCHL11_03977
DNA-directed RNA polymerase II subunit RPB11.
   
 0.943
CCHL11_05106
DNA-directed RNA polymerase II subunit rpb4.
   
 0.941
CCHL11_00407
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.938
CCHL11_09554
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.937
CCHL11_09897
SWR1-complex protein 4.
   
 0.929
CCHL11_09227
Chromatin structure-remodeling complex subunit snf21.
    
 
 0.916
Your Current Organism:
Colletotrichum chlorophyti
NCBI taxonomy Id: 708187
Other names: C. chlorophyti, Colletotrichum chlorophytumi, IMI 103806
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