STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCHL11_02807Putative RNA-binding protein C3H8.09c. (900 aa)    
Predicted Functional Partners:
CCHL11_04206
Rpb7-binding protein seb1.
    
 
 0.962
CCHL11_04960
Nuclear cap-binding protein subunit 2.
    
 0.933
CCHL11_03971
Nuclear cap-binding protein subunit 1.
    
 0.900
CCHL11_00635
Helicase SEN1.
    
 
 0.876
CCHL11_08360
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.782
CCHL11_07421
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.717
CCHL11_03696
ATP-dependent RNA helicase mtr4.
   
 
 0.712
CCHL11_08208
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.710
CCHL11_01433
DNA-directed RNA polymerase II subunit RPB3.
   
 0.710
CCHL11_01731
Nucleoporin nsp1.
    
 0.699
Your Current Organism:
Colletotrichum chlorophyti
NCBI taxonomy Id: 708187
Other names: C. chlorophyti, Colletotrichum chlorophytumi, IMI 103806
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