STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0861_01268Retinol dehydrogenase. (312 aa)    
Predicted Functional Partners:
CT0861_01841
Acyl-CoA desaturase.
    
  0.602
CT0861_07983
Acyl-CoA desaturase.
    
  0.602
CT0861_04099
Oxidoreductase.
     
  0.515
CT0861_08794
Dihydrofolate reductase.
     
  0.515
CT0861_05843
Dihydrofolate reductase.
     
  0.515
CT0861_00302
Nuclear elongation and deformation protein 1.
    
  0.411
CT0861_02999
Polyketide synthase.
    
  0.403
Your Current Organism:
Colletotrichum tofieldiae
NCBI taxonomy Id: 708197
Other names: C. tofieldiae, Colletotrichum dematium var. minus, Colletotrichum tofieldiae (Pat.) Damm, P.F. Cannon & Crous 2009, Vermicularia tofieldiae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.