STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0861_00519Pectate lyase catalytic (Pep1). (120 aa)    
Predicted Functional Partners:
CT0861_02999
Polyketide synthase.
   
  0.523
CT0861_12725
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.493
CT0861_01967
2Fe-2S iron-sulfur cluster binding domain-containing protein.
   
  0.491
CT0861_07119
Metallo-beta-lactamase family protein.
   
  0.491
CT0861_03912
Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.473
CT0861_01841
Acyl-CoA desaturase.
    
  0.468
CT0861_07983
Acyl-CoA desaturase.
    
  0.468
CT0861_05342
Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.
    
 0.461
CT0861_13094
Ankyrin repeat domain-containing protein 28.
    
  0.442
CT0861_09900
Replication factor A protein.
    
  0.406
Your Current Organism:
Colletotrichum tofieldiae
NCBI taxonomy Id: 708197
Other names: C. tofieldiae, Colletotrichum dematium var. minus, Colletotrichum tofieldiae (Pat.) Damm, P.F. Cannon & Crous 2009, Vermicularia tofieldiae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.