STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0861_11798Cupin 2 conserved barrel domain protein. (167 aa)    
Predicted Functional Partners:
CT0861_08217
Glucosidase 2 subunit beta.
   
 0.774
CT0861_12581
Nuclear pore glycoprotein p62.
    
  0.767
CT0861_09241
1,4-alpha-glucan-branching enzyme (Alpha amylase).
    
 0.606
CT0861_01838
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
    
 0.596
CT0861_05831
Nucleoporin nup44.
    
 0.596
CT0861_13094
Ankyrin repeat domain-containing protein 28.
    
  0.582
CT0861_04005
Starch binding domain-containing protein.
   
 
 0.581
CT0861_08066
Oxysterol-binding protein; Belongs to the OSBP family.
    
  0.549
CT0861_06102
Glycogen debranching enzyme.
    
 0.547
CT0861_02334
Glycoside hydrolase family 32 protein; Belongs to the glycosyl hydrolase 32 family.
     
 0.546
Your Current Organism:
Colletotrichum tofieldiae
NCBI taxonomy Id: 708197
Other names: C. tofieldiae, Colletotrichum dematium var. minus, Colletotrichum tofieldiae (Pat.) Damm, P.F. Cannon & Crous 2009, Vermicularia tofieldiae
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