CT0861_11607 protein (Colletotrichum tofieldiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CT0861_11607

HIT zinc finger. (497 aa)

Predicted Functional Partners:

CT0861_03310

0.949

CT0861_07946

0.904

CT0861_10446

0.885

CT0861_01263

0.857

CT0861_12721

0.844

CT0861_06899

0.791

CT0861_00156

0.618

CT0861_08185

0.616

CT0861_06477

0.601

CT0861_06680

0.586

Your Current Organism:

Colletotrichum tofieldiae

NCBI taxonomy Id: 708197
Other names: C. tofieldiae, Colletotrichum dematium var. minus, Colletotrichum tofieldiae (Pat.) Damm, P.F. Cannon & Crous 2009, Vermicularia tofieldiae

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT0861_00156	CT0861_03310	A0A161YLJ8	A0A166XPD2	RNA helicase.	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	0.990
CT0861_00156	CT0861_06477	A0A161YLJ8	A0A166YEC2	RNA helicase.	Small nucleolar ribonucleoprotein complex subunit (BING4CT domain-containing protein).	0.930
CT0861_00156	CT0861_06680	A0A161YLJ8	A0A161W651	RNA helicase.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.967
CT0861_00156	CT0861_07946	A0A161YLJ8	A0A166VLA5	RNA helicase.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.452
CT0861_00156	CT0861_08185	A0A161YLJ8	A0A166QSK9	RNA helicase.	Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family.	0.475
CT0861_00156	CT0861_11607	A0A161YLJ8	A0A166RAM3	RNA helicase.	HIT zinc finger.	0.618
CT0861_01263	CT0861_03310	A0A166LKZ6	A0A166XPD2	HIT zinc finger.	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	0.535
CT0861_01263	CT0861_06899	A0A166LKZ6	A0A161XVI2	HIT zinc finger.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.420
CT0861_01263	CT0861_07946	A0A166LKZ6	A0A166VLA5	HIT zinc finger.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.501
CT0861_01263	CT0861_10446	A0A166LKZ6	A0A166MFX5	HIT zinc finger.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.513
CT0861_01263	CT0861_11607	A0A166LKZ6	A0A166RAM3	HIT zinc finger.	HIT zinc finger.	0.857
CT0861_03310	CT0861_00156	A0A166XPD2	A0A161YLJ8	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	RNA helicase.	0.990
CT0861_03310	CT0861_01263	A0A166XPD2	A0A166LKZ6	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	HIT zinc finger.	0.535
CT0861_03310	CT0861_06477	A0A166XPD2	A0A166YEC2	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	Small nucleolar ribonucleoprotein complex subunit (BING4CT domain-containing protein).	0.980
CT0861_03310	CT0861_06680	A0A166XPD2	A0A161W651	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.993
CT0861_03310	CT0861_06899	A0A166XPD2	A0A161XVI2	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.987
CT0861_03310	CT0861_07946	A0A166XPD2	A0A166VLA5	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
CT0861_03310	CT0861_08185	A0A166XPD2	A0A166QSK9	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family.	0.624
CT0861_03310	CT0861_10446	A0A166XPD2	A0A166MFX5	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.987
CT0861_03310	CT0861_11607	A0A166XPD2	A0A166RAM3	Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).	HIT zinc finger.	0.949

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About