STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0861_11607HIT zinc finger. (497 aa)    
Predicted Functional Partners:
CT0861_12721
Histone chaperone rttp106-like protein.
    
   0.880
CT0861_03310
Nucleolar protein NOP58-like protein (NOSIC domain-containing protein).
   
 
 0.880
CT0861_00156
RNA helicase.
   
  
 0.675
CT0861_08185
Protein BCP1; Involved in nuclear export, actin cytoskeleton organization and vesicular transport; Belongs to the BCP1 family.
   
  
 0.630
CT0861_11789
G-patch domain-containing protein.
   
    0.621
CT0861_13135
rRNA-processing protein UTP23.
   
    0.615
CT0861_01263
HIT zinc finger.
    
 
 0.602
CT0861_06899
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 
 0.593
CT0861_06477
Small nucleolar ribonucleoprotein complex subunit (BING4CT domain-containing protein).
   
   0.581
CT0861_09215
rRNA processing protein (Bystin).
   
 
 0.577
Your Current Organism:
Colletotrichum tofieldiae
NCBI taxonomy Id: 708197
Other names: C. tofieldiae, Colletotrichum dematium var. minus, Colletotrichum tofieldiae (Pat.) Damm, P.F. Cannon & Crous 2009, Vermicularia tofieldiae
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