STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR34868.1COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR018044: IPR001967; KEGG: wsu:WS0721 penicillin-binding protein; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; SPTR: PENICILLIN-BINDING PROTEIN; PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (275 aa)    
Predicted Functional Partners:
ADR34882.1
Penicillin-binding protein, 1A family; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR011816: IPR001264: IPR001460; KEGG: tdn:Suden_1892 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: Penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.
  
 
 0.911
ADR34532.1
COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR018044: IPR001967; KEGG: sdl:Sdel_1720 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; SPTR: Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.902
ADR34869.1
Cytochrome c class I; InterPro IPR009056: IPR003088; KEGG: nis:NIS_1292 cytochrome c, class I; PFAM: cytochrome c class I; SPTR: Putative uncharacterized protein; PFAM: Cytochrome c.
       0.484
ADR34870.1
KEGG: wsu:WS1662 hypothetical protein; SPTR: Putative uncharacterized protein fliD.
       0.414
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.410
Your Current Organism:
Sulfuricurvum kujiense
NCBI taxonomy Id: 709032
Other names: S. kujiense DSM 16994, Sulfuricurvum kujiense DSM 16994, Sulfuricurvum kujiense YK-1, Sulfuricurvum kujiense str. DSM 16994, Sulfuricurvum kujiense strain DSM 16994
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