STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR35001.1UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterProIPR019756: IPR014016: IPR014017: IPR000212: IPR 011600; KEGG: tdn:Suden_0090 putative recombination protein RecB; PFAM: UvrD/REP helicase; peptidase C14 caspase catalytic subunit p20; SPTR: UvrD/REP helicase; PFAM: Domain of unknown function DUF83; UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (900 aa)    
Predicted Functional Partners:
ADR35002.1
Hypothetical protein; COGs: COG3893 Inactivated superfamily I helicase; KEGG: tdn:Suden_0088 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF83.
 
   
 0.959
ADR34368.1
Hypothetical protein; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: sti:Sthe_2091 ATP-dependent nuclease subunit B-like protein; SPTR: ATP-dependent nuclease subunit B-like protein.
  
 
 0.946
ADR34860.1
AAA ATPase; COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593; KEGG: tdn:Suden_1852 ATPase; SMART: AAA ATPase; SPTR: ATPase; PFAM: Viral (Superfamily 1) RNA helicase; TIGRFAM: helicase, putative, RecD/TraA family.
  
 
 0.841
ADR33013.1
AAA ATPase; COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593; KEGG: tdn:Suden_1779 ATPase; SMART: AAA ATPase; SPTR: ATPase; PFAM: PIF1 helicase.
  
 
 0.837
ADR33245.1
KEGG: nis:NIS_0882 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.648
ADR32971.1
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: tdn:Suden_0413 DNA uptake lipoprotein-like; SPTR: DNA uptake lipoprotein-like protein; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
    0.625
rpsU
SSU ribosomal protein S21P; InterPro IPR018278: IPR001911; KEGG: tdn:Suden_0022 30S ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
     0.611
ADR33829.1
InterPro IPR003825; KEGG: tdn:Suden_1271 colicin V production protein; PFAM: Colicin V production protein; SPTR: CvpA family protein; PFAM: Colicin V production protein.
  
     0.604
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.599
ADR34054.1
Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: tdn:Suden_0916 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c biogenesis protein; PFAM: Cytochrome C assembly protein; ResB-like family; TIGRFAM: cytochrome c-type biogenesis protein CcsB.
  
     0.592
Your Current Organism:
Sulfuricurvum kujiense
NCBI taxonomy Id: 709032
Other names: S. kujiense DSM 16994, Sulfuricurvum kujiense DSM 16994, Sulfuricurvum kujiense YK-1, Sulfuricurvum kujiense str. DSM 16994, Sulfuricurvum kujiense strain DSM 16994
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