STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR35086.1Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: ant:Arnit_0993 integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (390 aa)    
Predicted Functional Partners:
ADR33043.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: tdn:Suden_1638 transformation system protein; PFAM: phosphoribosyltransferase; SPTR: Transformation system protein; PFAM: Phosphoribosyl transferase domain.
   
    0.539
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.539
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.512
ADR35084.1
DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: eoi:ECO111_0318 putative DNA modification methylase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm).
 
  
 0.493
ADR33098.1
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: tdn:Suden_0659 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
  
    0.485
ADR34341.1
Integrase family protein; InterPro IPR002104; KEGG: wsu:WS2030 putative integrase; PFAM: integrase family protein; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.471
ADR35085.1
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR014818: IPR014015: IPR006500; KEGG: cpb:Cphamn1_0217 P4 family phage/plasmid primase; PFAM: primase P4; SPTR: Phage/plasmid primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
       0.426
Your Current Organism:
Sulfuricurvum kujiense
NCBI taxonomy Id: 709032
Other names: S. kujiense DSM 16994, Sulfuricurvum kujiense DSM 16994, Sulfuricurvum kujiense YK-1, Sulfuricurvum kujiense str. DSM 16994, Sulfuricurvum kujiense strain DSM 16994
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