H9IY06_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9IY06_BOMMO

Uncharacterized protein. (239 aa)

Predicted Functional Partners:

H9IY07_BOMMO

0.936

H9JJZ4_BOMMO

0.540

H9JC73_BOMMO

0.511

H9JAZ1_BOMMO

0.506

H9ITZ1_BOMMO

0.453

H9JKL8_BOMMO

0.453

H9JKL9_BOMMO

0.453

Ebony

0.452

H9IUW1_BOMMO

0.452

H9JLE9_BOMMO

0.431

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ebony	H9IY06_BOMMO	H9IS08	H9IY06	Uncharacterized protein.	Uncharacterized protein.	0.452
Ebony	H9IY07_BOMMO	H9IS08	H9IY07	Uncharacterized protein.	Uncharacterized protein.	0.529
Ebony	H9JC73_BOMMO	H9IS08	H9JC73	Uncharacterized protein.	SCP2 domain-containing protein.	0.513
Ebony	H9JJZ4_BOMMO	H9IS08	H9JJZ4	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.992
H9ITZ1_BOMMO	H9IY06_BOMMO	H9ITZ1	H9IY06	Uncharacterized protein.	Uncharacterized protein.	0.453
H9ITZ1_BOMMO	H9IY07_BOMMO	H9ITZ1	H9IY07	Uncharacterized protein.	Uncharacterized protein.	0.453
H9ITZ1_BOMMO	H9JC73_BOMMO	H9ITZ1	H9JC73	Uncharacterized protein.	SCP2 domain-containing protein.	0.848
H9ITZ1_BOMMO	H9JJZ4_BOMMO	H9ITZ1	H9JJZ4	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.456
H9IUW1_BOMMO	H9IY06_BOMMO	H9IUW1	H9IY06	Uncharacterized protein.	Uncharacterized protein.	0.452
H9IUW1_BOMMO	H9IY07_BOMMO	H9IUW1	H9IY07	Uncharacterized protein.	Uncharacterized protein.	0.452
H9IUW1_BOMMO	H9JC73_BOMMO	H9IUW1	H9JC73	Uncharacterized protein.	SCP2 domain-containing protein.	0.513
H9IUW1_BOMMO	H9JJZ4_BOMMO	H9IUW1	H9JJZ4	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.992
H9IY06_BOMMO	Ebony	H9IY06	H9IS08	Uncharacterized protein.	Uncharacterized protein.	0.452
H9IY06_BOMMO	H9ITZ1_BOMMO	H9IY06	H9ITZ1	Uncharacterized protein.	Uncharacterized protein.	0.453
H9IY06_BOMMO	H9IUW1_BOMMO	H9IY06	H9IUW1	Uncharacterized protein.	Uncharacterized protein.	0.452
H9IY06_BOMMO	H9IY07_BOMMO	H9IY06	H9IY07	Uncharacterized protein.	Uncharacterized protein.	0.936
H9IY06_BOMMO	H9JAZ1_BOMMO	H9IY06	H9JAZ1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.506
H9IY06_BOMMO	H9JC73_BOMMO	H9IY06	H9JC73	Uncharacterized protein.	SCP2 domain-containing protein.	0.511
H9IY06_BOMMO	H9JJZ4_BOMMO	H9IY06	H9JJZ4	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.540
H9IY06_BOMMO	H9JKL8_BOMMO	H9IY06	H9JKL8	Uncharacterized protein.	Uncharacterized protein.	0.453