H9J0T3_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9J0T3_BOMMO

HP domain-containing protein. (191 aa)

Predicted Functional Partners:

H9IWX2_BOMMO

0.903

H9J0T2_BOMMO

0.900

H9IWX1_BOMMO

0.550

H9J768_BOMMO

0.530

H9J093_BOMMO

0.500

H9J9V3_BOMMO

0.500

H9J9V4_BOMMO

0.500

H9J0D8_BOMMO

0.495

H9IZM3_BOMMO

0.483

H9J5D9_BOMMO

0.481

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9IWX1_BOMMO	H9IZM3_BOMMO	H9IWX1	H9IZM3	Uncharacterized protein.	Uncharacterized protein.	0.483
H9IWX1_BOMMO	H9J093_BOMMO	H9IWX1	H9J093	Uncharacterized protein.	PDZ domain-containing protein.	0.500
H9IWX1_BOMMO	H9J0D8_BOMMO	H9IWX1	H9J0D8	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.495
H9IWX1_BOMMO	H9J0T3_BOMMO	H9IWX1	H9J0T3	Uncharacterized protein.	HP domain-containing protein.	0.550
H9IWX1_BOMMO	H9J5D9_BOMMO	H9IWX1	H9J5D9	Uncharacterized protein.	Uncharacterized protein.	0.481
H9IWX1_BOMMO	H9J768_BOMMO	H9IWX1	H9J768	Uncharacterized protein.	Uncharacterized protein.	0.530
H9IWX1_BOMMO	H9J9V3_BOMMO	H9IWX1	H9J9V3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.500
H9IWX1_BOMMO	H9J9V4_BOMMO	H9IWX1	H9J9V4	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.500
H9IWX2_BOMMO	H9IZM3_BOMMO	H9IWX2	H9IZM3	Uncharacterized protein.	Uncharacterized protein.	0.483
H9IWX2_BOMMO	H9J093_BOMMO	H9IWX2	H9J093	Uncharacterized protein.	PDZ domain-containing protein.	0.500
H9IWX2_BOMMO	H9J0D8_BOMMO	H9IWX2	H9J0D8	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.495
H9IWX2_BOMMO	H9J0T3_BOMMO	H9IWX2	H9J0T3	Uncharacterized protein.	HP domain-containing protein.	0.903
H9IWX2_BOMMO	H9J5D9_BOMMO	H9IWX2	H9J5D9	Uncharacterized protein.	Uncharacterized protein.	0.481
H9IWX2_BOMMO	H9J768_BOMMO	H9IWX2	H9J768	Uncharacterized protein.	Uncharacterized protein.	0.530
H9IWX2_BOMMO	H9J9V3_BOMMO	H9IWX2	H9J9V3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.500
H9IWX2_BOMMO	H9J9V4_BOMMO	H9IWX2	H9J9V4	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.500
H9IZM3_BOMMO	H9IWX1_BOMMO	H9IZM3	H9IWX1	Uncharacterized protein.	Uncharacterized protein.	0.483
H9IZM3_BOMMO	H9IWX2_BOMMO	H9IZM3	H9IWX2	Uncharacterized protein.	Uncharacterized protein.	0.483
H9IZM3_BOMMO	H9J0D8_BOMMO	H9IZM3	H9J0D8	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.994
H9IZM3_BOMMO	H9J0T2_BOMMO	H9IZM3	H9J0T2	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.483