H9J848_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9J848_BOMMO

Glyco_hydro_85 domain-containing protein. (322 aa)

Predicted Functional Partners:

H9J849_BOMMO

0.760

H9JPS7_BOMMO

0.520

H9JTB8_BOMMO

0.472

H9JP19_BOMMO

0.452

H9IVY4_BOMMO

0.419

H9IWB8_BOMMO

0.419

H9J201_BOMMO

0.411

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9IVY4_BOMMO	H9J201_BOMMO	H9IVY4	H9J201	Uncharacterized protein.	Uncharacterized protein.	0.691
H9IVY4_BOMMO	H9J848_BOMMO	H9IVY4	H9J848	Uncharacterized protein.	Glyco_hydro_85 domain-containing protein.	0.419
H9IVY4_BOMMO	H9J849_BOMMO	H9IVY4	H9J849	Uncharacterized protein.	Uncharacterized protein.	0.419
H9IVY4_BOMMO	H9JP19_BOMMO	H9IVY4	H9JP19	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.940
H9IWB8_BOMMO	H9J201_BOMMO	H9IWB8	H9J201	Uncharacterized protein.	Uncharacterized protein.	0.691
H9IWB8_BOMMO	H9J848_BOMMO	H9IWB8	H9J848	Uncharacterized protein.	Glyco_hydro_85 domain-containing protein.	0.419
H9IWB8_BOMMO	H9J849_BOMMO	H9IWB8	H9J849	Uncharacterized protein.	Uncharacterized protein.	0.419
H9IWB8_BOMMO	H9JP19_BOMMO	H9IWB8	H9JP19	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.942
H9J201_BOMMO	H9IVY4_BOMMO	H9J201	H9IVY4	Uncharacterized protein.	Uncharacterized protein.	0.691
H9J201_BOMMO	H9IWB8_BOMMO	H9J201	H9IWB8	Uncharacterized protein.	Uncharacterized protein.	0.691
H9J201_BOMMO	H9J848_BOMMO	H9J201	H9J848	Uncharacterized protein.	Glyco_hydro_85 domain-containing protein.	0.411
H9J201_BOMMO	H9J849_BOMMO	H9J201	H9J849	Uncharacterized protein.	Uncharacterized protein.	0.411
H9J848_BOMMO	H9IVY4_BOMMO	H9J848	H9IVY4	Glyco_hydro_85 domain-containing protein.	Uncharacterized protein.	0.419
H9J848_BOMMO	H9IWB8_BOMMO	H9J848	H9IWB8	Glyco_hydro_85 domain-containing protein.	Uncharacterized protein.	0.419
H9J848_BOMMO	H9J201_BOMMO	H9J848	H9J201	Glyco_hydro_85 domain-containing protein.	Uncharacterized protein.	0.411
H9J848_BOMMO	H9J849_BOMMO	H9J848	H9J849	Glyco_hydro_85 domain-containing protein.	Uncharacterized protein.	0.760
H9J848_BOMMO	H9JP19_BOMMO	H9J848	H9JP19	Glyco_hydro_85 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.452
H9J848_BOMMO	H9JPS7_BOMMO	H9J848	H9JPS7	Glyco_hydro_85 domain-containing protein.	Uncharacterized protein.	0.520
H9J848_BOMMO	H9JTB8_BOMMO	H9J848	H9JTB8	Glyco_hydro_85 domain-containing protein.	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.	0.472
H9J849_BOMMO	H9IVY4_BOMMO	H9J849	H9IVY4	Uncharacterized protein.	Uncharacterized protein.	0.419