H9J996_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9J996_BOMMO

F-box domain-containing protein. (333 aa)

Predicted Functional Partners:

Q1HQ42_BOMMO

0.974

H9J5R2_BOMMO

0.881

H9JJH3_BOMMO

0.869

H9J5F0_BOMMO

0.827

H9IVF2_BOMMO

0.675

H9J5E9_BOMMO

0.648

H9IUP1_BOMMO

0.647

H9JVI5_BOMMO

0.644

H9JCT7_BOMMO

0.631

H9J844_BOMMO

0.587

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9IUP1_BOMMO	H9IVF2_BOMMO	H9IUP1	H9IVF2	Uncharacterized protein.	RING-type domain-containing protein.	0.490
H9IUP1_BOMMO	H9J996_BOMMO	H9IUP1	H9J996	Uncharacterized protein.	F-box domain-containing protein.	0.647
H9IUP1_BOMMO	H9JCT7_BOMMO	H9IUP1	H9JCT7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.500
H9IVF2_BOMMO	H9IUP1_BOMMO	H9IVF2	H9IUP1	RING-type domain-containing protein.	Uncharacterized protein.	0.490
H9IVF2_BOMMO	H9J5E9_BOMMO	H9IVF2	H9J5E9	RING-type domain-containing protein.	Uncharacterized protein.	0.832
H9IVF2_BOMMO	H9J5F0_BOMMO	H9IVF2	H9J5F0	RING-type domain-containing protein.	CPSF_A domain-containing protein.	0.992
H9IVF2_BOMMO	H9J996_BOMMO	H9IVF2	H9J996	RING-type domain-containing protein.	F-box domain-containing protein.	0.675
H9IVF2_BOMMO	H9JCT7_BOMMO	H9IVF2	H9JCT7	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.992
H9IVF2_BOMMO	H9JJH3_BOMMO	H9IVF2	H9JJH3	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997
H9IVF2_BOMMO	H9JVI5_BOMMO	H9IVF2	H9JVI5	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.992
H9IVF2_BOMMO	Q1HQ42_BOMMO	H9IVF2	Q1HQ42	RING-type domain-containing protein.	S-phase kinase-associated protein; Belongs to the SKP1 family.	0.999
H9J5E9_BOMMO	H9IVF2_BOMMO	H9J5E9	H9IVF2	Uncharacterized protein.	RING-type domain-containing protein.	0.832
H9J5E9_BOMMO	H9J5F0_BOMMO	H9J5E9	H9J5F0	Uncharacterized protein.	CPSF_A domain-containing protein.	0.900
H9J5E9_BOMMO	H9J996_BOMMO	H9J5E9	H9J996	Uncharacterized protein.	F-box domain-containing protein.	0.648
H9J5E9_BOMMO	H9JCT7_BOMMO	H9J5E9	H9JCT7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.828
H9J5E9_BOMMO	Q1HQ42_BOMMO	H9J5E9	Q1HQ42	Uncharacterized protein.	S-phase kinase-associated protein; Belongs to the SKP1 family.	0.432
H9J5F0_BOMMO	H9IVF2_BOMMO	H9J5F0	H9IVF2	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.992
H9J5F0_BOMMO	H9J5E9_BOMMO	H9J5F0	H9J5E9	CPSF_A domain-containing protein.	Uncharacterized protein.	0.900
H9J5F0_BOMMO	H9J996_BOMMO	H9J5F0	H9J996	CPSF_A domain-containing protein.	F-box domain-containing protein.	0.827
H9J5F0_BOMMO	H9JCT7_BOMMO	H9J5F0	H9JCT7	CPSF_A domain-containing protein.	Ubiquitin-like domain-containing protein.	0.884