STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H9JBK1_BOMMONop domain-containing protein. (345 aa)    
Predicted Functional Partners:
H9JRK3_BOMMO
Uncharacterized protein.
   
 0.970
H9J8J6_BOMMO
Uncharacterized protein.
   
 0.969
H9JBK2_BOMMO
Prp31_C domain-containing protein.
 
  
  0.957
H9J9Q2_BOMMO
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.956
H9JRN1_BOMMO
Uncharacterized protein.
   
 0.956
H9JIF7_BOMMO
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.953
H9JHB4_BOMMO
Uncharacterized protein.
   
 0.949
H9JEK7_BOMMO
Tr-type G domain-containing protein.
   
 0.945
H9JJW5_BOMMO
MPN domain-containing protein.
    
 0.942
H9IUG8_BOMMO
SF3A2 domain-containing protein.
   
 
 0.924
Your Current Organism:
Bombyx mori
NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.