H9JDG0_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9JDG0_BOMMO

Uncharacterized protein. (269 aa)

Predicted Functional Partners:

H9JQ71_BOMMO

0.830

H9J002_BOMMO

0.677

H9J1M6_BOMMO

0.594

H9ISR3_BOMMO

0.573

ESC

0.551

H9J315_BOMMO

0.549

SU(Z)12

0.543

H9JEN7_BOMMO

0.541

UBI1

0.489

H9J034_BOMMO

0.471

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ESC	H9J034_BOMMO	H9J9Y0	H9J034	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.702
ESC	H9J315_BOMMO	H9J9Y0	H9J315	WD_REPEATS_REGION domain-containing protein.	DDE_Tnp_1_7 domain-containing protein.	0.443
ESC	H9JDG0_BOMMO	H9J9Y0	H9JDG0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.551
ESC	H9JQ71_BOMMO	H9J9Y0	H9JQ71	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.476
ESC	SU(Z)12	H9J9Y0	H9JQN6	WD_REPEATS_REGION domain-containing protein.	VEFS-Box domain-containing protein.	0.999
ESC	UBI1	H9J9Y0	Q9XXZ4	WD_REPEATS_REGION domain-containing protein.	Ubiquitin/ribosomal protein L40 fusion protein.	0.536
H9ISR3_BOMMO	H9JDG0_BOMMO	H9ISR3	H9JDG0	FGE-sulfatase domain-containing protein.	Uncharacterized protein.	0.573
H9J002_BOMMO	H9JDG0_BOMMO	H9J002	H9JDG0	Uncharacterized protein.	Uncharacterized protein.	0.677
H9J034_BOMMO	ESC	H9J034	H9J9Y0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.702
H9J034_BOMMO	H9J1M6_BOMMO	H9J034	H9J1M6	Uncharacterized protein.	Uncharacterized protein.	0.881
H9J034_BOMMO	H9JDG0_BOMMO	H9J034	H9JDG0	Uncharacterized protein.	Uncharacterized protein.	0.471
H9J034_BOMMO	H9JEN7_BOMMO	H9J034	H9JEN7	Uncharacterized protein.	NAD-dependent protein deacylase; NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo.	0.654
H9J034_BOMMO	H9JQ71_BOMMO	H9J034	H9JQ71	Uncharacterized protein.	Uncharacterized protein.	0.871
H9J034_BOMMO	SU(Z)12	H9J034	H9JQN6	Uncharacterized protein.	VEFS-Box domain-containing protein.	0.631
H9J034_BOMMO	UBI1	H9J034	Q9XXZ4	Uncharacterized protein.	Ubiquitin/ribosomal protein L40 fusion protein.	0.780
H9J1M6_BOMMO	H9J034_BOMMO	H9J1M6	H9J034	Uncharacterized protein.	Uncharacterized protein.	0.881
H9J1M6_BOMMO	H9JDG0_BOMMO	H9J1M6	H9JDG0	Uncharacterized protein.	Uncharacterized protein.	0.594
H9J1M6_BOMMO	H9JEN7_BOMMO	H9J1M6	H9JEN7	Uncharacterized protein.	NAD-dependent protein deacylase; NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo.	0.594
H9J1M6_BOMMO	H9JQ71_BOMMO	H9J1M6	H9JQ71	Uncharacterized protein.	Uncharacterized protein.	0.450
H9J315_BOMMO	ESC	H9J315	H9J9Y0	DDE_Tnp_1_7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.443