H9JIV3_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9JIV3_BOMMO

Uncharacterized protein. (304 aa)

Predicted Functional Partners:

H9JJW5_BOMMO

0.893

H9JDU7_BOMMO

0.885

H9JWH7_BOMMO

0.829

H9JP62_BOMMO

0.816

H9IZ67_BOMMO

0.815

H9JAC9_BOMMO

0.801

MED18

0.801

H9JGY1_BOMMO

0.784

H9JGY2_BOMMO

0.784

H9JV03_BOMMO

0.709

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9IZ67_BOMMO	H9JIV3_BOMMO	H9IZ67	H9JIV3	Nkap_C domain-containing protein.	Uncharacterized protein.	0.815
H9IZ67_BOMMO	H9JP62_BOMMO	H9IZ67	H9JP62	Nkap_C domain-containing protein.	Slu7 domain-containing protein.	0.882
H9IZ67_BOMMO	H9JWH7_BOMMO	H9IZ67	H9JWH7	Nkap_C domain-containing protein.	PRP38_assoc domain-containing protein.	0.834
H9JAC9_BOMMO	H9JDU7_BOMMO	H9JAC9	H9JDU7	Uncharacterized protein.	Uncharacterized protein.	0.806
H9JAC9_BOMMO	H9JIV3_BOMMO	H9JAC9	H9JIV3	Uncharacterized protein.	Uncharacterized protein.	0.801
H9JAC9_BOMMO	H9JWH7_BOMMO	H9JAC9	H9JWH7	Uncharacterized protein.	PRP38_assoc domain-containing protein.	0.801
H9JAC9_BOMMO	MED18	H9JAC9	H9JED0	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.829
H9JDU7_BOMMO	H9JAC9_BOMMO	H9JDU7	H9JAC9	Uncharacterized protein.	Uncharacterized protein.	0.806
H9JDU7_BOMMO	H9JIV3_BOMMO	H9JDU7	H9JIV3	Uncharacterized protein.	Uncharacterized protein.	0.885
H9JDU7_BOMMO	H9JWH7_BOMMO	H9JDU7	H9JWH7	Uncharacterized protein.	PRP38_assoc domain-containing protein.	0.801
H9JDU7_BOMMO	MED18	H9JDU7	H9JED0	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.999
H9JGY1_BOMMO	H9JGY2_BOMMO	H9JGY1	H9JGY2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.900
H9JGY1_BOMMO	H9JIV3_BOMMO	H9JGY1	H9JIV3	Uncharacterized protein.	Uncharacterized protein.	0.784
H9JGY1_BOMMO	H9JJW5_BOMMO	H9JGY1	H9JJW5	Uncharacterized protein.	MPN domain-containing protein.	0.995
H9JGY1_BOMMO	H9JP62_BOMMO	H9JGY1	H9JP62	Uncharacterized protein.	Slu7 domain-containing protein.	0.931
H9JGY1_BOMMO	H9JWH7_BOMMO	H9JGY1	H9JWH7	Uncharacterized protein.	PRP38_assoc domain-containing protein.	0.459
H9JGY2_BOMMO	H9JGY1_BOMMO	H9JGY2	H9JGY1	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.900
H9JGY2_BOMMO	H9JIV3_BOMMO	H9JGY2	H9JIV3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.784
H9JGY2_BOMMO	H9JJW5_BOMMO	H9JGY2	H9JJW5	Helicase ATP-binding domain-containing protein.	MPN domain-containing protein.	0.995
H9JGY2_BOMMO	H9JP62_BOMMO	H9JGY2	H9JP62	Helicase ATP-binding domain-containing protein.	Slu7 domain-containing protein.	0.931