STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H9JRN2_BOMMOSNRNP27 domain-containing protein. (145 aa)    
Predicted Functional Partners:
H9JDS9_BOMMO
Uncharacterized protein.
   
 0.949
H9J8J6_BOMMO
Uncharacterized protein.
    
 0.878
H9JTG1_BOMMO
Uncharacterized protein.
   
 0.850
H9J6S1_BOMMO
RRM domain-containing protein.
    
  0.817
H9JD02_BOMMO
WD_REPEATS_REGION domain-containing protein.
   
  0.808
H9JRN1_BOMMO
Uncharacterized protein.
   
  0.807
Q2F679_BOMMO
U6 snRNA-associated Sm-like protein.
    
 0.795
H9JC23_BOMMO
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
  0.731
H9IX42_BOMMO
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.730
H9JU88_BOMMO
Small nuclear ribonucleoprotein Sm D3.
   
 0.730
Your Current Organism:
Bombyx mori
NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm
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