STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabBRab1 protein; Small GTP-binding protein. (202 aa)    
Predicted Functional Partners:
H9IV39_BOMMO
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.995
H9JTN1_BOMMO
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.989
H9IY86_BOMMO
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.988
H9J8M2_BOMMO
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.986
H9J1T6_BOMMO
Uncharacterized protein.
    
 0.983
H9JP27_BOMMO
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.978
H9JGS0_BOMMO
Uncharacterized protein.
    
 0.977
H9J2P5_BOMMO
Rab-GAP TBC domain-containing protein.
    
 0.969
H9JM67_BOMMO
t-SNARE coiled-coil homology domain-containing protein.
    
 0.927
H9JEM4_BOMMO
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.917
Your Current Organism:
Bombyx mori
NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm
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