STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asp1Unannotated protein. (477 aa)    
Predicted Functional Partners:
FTRO_0012430
Unannotated protein.
 
 
 
 0.998
FTRO_0012450
Unannotated protein.
 
     0.937
gtf1
Unannotated protein.
 
   
 0.907
FTRO_0060560
Unannotated protein.
 
     0.659
glf2
Unannotated protein.
  
 
 0.630
FTRO_0630010
Unannotated protein.
  
 
   0.629
FTRO_0030200
Unannotated protein.
  
     0.627
FTRO_0070730
Unannotated protein; Belongs to the SecE/SEC61-gamma family.
  
     0.565
topA2
Unannotated protein.
  
 
   0.542
polA
Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.517
Your Current Organism:
Fructobacillus tropaeoli
NCBI taxonomy Id: 709323
Other names: DSM 23246, F. tropaeoli, Fructobacillus sp. F214-1, Fructobacillus tropaeoli Endo et al. 2011, JCM 16675, strain F214-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.