CSIRO_0024 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_0024

Branched-chain amino acid ABC-type transport system protein; Belongs to the binding-protein-dependent transport system permease family. (615 aa)

Predicted Functional Partners:

CSIRO_0023

0.983

CSIRO_2005

0.983

CSIRO_0022

0.977

CSIRO_0025

0.976

CSIRO_1894

0.945

CSIRO_2253

0.944

CSIRO_1426

0.942

CSIRO_0062

0.933

CSIRO_2085

0.932

CSIRO_0019

0.910

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CSIRO_0019	CSIRO_0022	ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.778
CSIRO_0019	CSIRO_0023	ABC transporter substrate-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.835
CSIRO_0019	CSIRO_0024	ABC transporter substrate-binding protein.	Branched-chain amino acid ABC-type transport system protein; Belongs to the binding-protein-dependent transport system permease family.	0.910
CSIRO_0019	CSIRO_0062	ABC transporter substrate-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.851
CSIRO_0019	CSIRO_1426	ABC transporter substrate-binding protein.	ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.621
CSIRO_0019	CSIRO_1894	ABC transporter substrate-binding protein.	ABC transporter related protein; Belongs to the binding-protein-dependent transport system permease family.	0.621
CSIRO_0019	CSIRO_2005	ABC transporter substrate-binding protein.	ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.906
CSIRO_0019	CSIRO_2085	ABC transporter substrate-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.846
CSIRO_0019	CSIRO_2253	ABC transporter substrate-binding protein.	Branched-chain amino acid transport ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.	0.621
CSIRO_0022	CSIRO_0019	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.778
CSIRO_0022	CSIRO_0023	ABC transporter ATP-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.885
CSIRO_0022	CSIRO_0024	ABC transporter ATP-binding protein.	Branched-chain amino acid ABC-type transport system protein; Belongs to the binding-protein-dependent transport system permease family.	0.977
CSIRO_0022	CSIRO_0025	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.939
CSIRO_0022	CSIRO_0062	ABC transporter ATP-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.847
CSIRO_0022	CSIRO_1426	ABC transporter ATP-binding protein.	ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.687
CSIRO_0022	CSIRO_1894	ABC transporter ATP-binding protein.	ABC transporter related protein; Belongs to the binding-protein-dependent transport system permease family.	0.736
CSIRO_0022	CSIRO_2005	ABC transporter ATP-binding protein.	ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.697
CSIRO_0022	CSIRO_2085	ABC transporter ATP-binding protein.	Branched-chain amino acid transport ATP-binding protein.	0.520
CSIRO_0022	CSIRO_2253	ABC transporter ATP-binding protein.	Branched-chain amino acid transport ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.	0.720
CSIRO_0023	CSIRO_0019	Branched-chain amino acid transport ATP-binding protein.	ABC transporter substrate-binding protein.	0.835