Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0048Carbon monoxide dehydrogenase medium chain. (284 aa)    
Predicted Functional Partners:
CSIRO_0047
Carbon monoxide dehydrogenase small chain.
 0.986
CSIRO_0046
Carbon monoxide dehydrogenase large chain.
 
 0.963
CSIRO_0775
Carbon monoxide dehydrogenase small chain.
 0.952
CSIRO_0053
Xanthine dehydrogenase family protein, large subunit.
 
 0.943
CSIRO_1950
Carbon monoxide dehydrogenase large chain.
 
 0.943
CSIRO_0728
Carbon monoxide dehydrogenase large chain.
 
 0.942
CSIRO_2547
Carbon monoxide dehydrogenase large chain.
 
 0.942
CSIRO_3830
Xanthine dehydrogenase family protein, large subunit.
 
 0.942
CSIRO_0776
Carbon monoxide dehydrogenase large chain.
 
 0.940
CSIRO_3651
Carbon monoxide dehydrogenase small chain.
 
 0.934
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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