Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0067Hypothetical protein. (330 aa)    
Predicted Functional Partners:
CSIRO_0066
Putative acetolactate synthase large subunit; Belongs to the TPP enzyme family.
       0.769
CSIRO_3740
Aerobic fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.722
CSIRO_2662
NAD-dependent malic enzyme.
     
  0.720
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
     
  0.671
CSIRO_3951
Hypothetical protein.
  
  
 0.545
CSIRO_3956
Hypothetical protein.
  
  
 0.545
CSIRO_2221
Hypothetical protein.
 
  
  0.471
CSIRO_0396
Salicylate hydroxylase.
 
  
  0.467
CSIRO_1983
3-hydroxyacyl-CoA dehydrogenase.
 
 
  0.456
CSIRO_3601
Salicylate hydroxylase.
 
  
  0.456
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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