STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbCConjugative transfer protein TrbC. (75 aa)    
Predicted Functional Partners:
trbE
Conjugative transfer protein TrbE.
 
 
 0.980
trbD
Conjugative transfer protein TrbD.
 
  
 0.970
trbJ
Conjugative transfer protein TrbJ.
 
  
 0.967
trbG
Conjugative transfer protein TrbG.
 
  
 0.952
trbI
Conjugative transfer protein TrbI.
 
  
 0.951
trbL
Conjugative transfer protein TrbL.
 
  
 0.947
trbF
Conjugative transfer protein TrbF.
 
  
 0.944
trbB
Conjugative transfer protein TrbB.
 
  
 0.932
CSIRO_0100
Type IV secretion system protein VirD4.
 
   
 0.804
CSIRO_0099
CopG domain-containing protein.
 
     0.801
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.