Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbBConjugative transfer protein TrbB. (304 aa)    
Predicted Functional Partners:
tadB
Flp pilus assembly protein TadB.
 
 
 0.969
trbC
Conjugative transfer protein TrbC.
 
  
 0.966
trbE
Conjugative transfer protein TrbE.
 
  
 0.961
trbD
Conjugative transfer protein TrbD.
 
  
 0.957
trbJ
Conjugative transfer protein TrbJ.
 
  
 0.953
tadC
Type II/IV secretion system protein TadC.
 
 
 0.946
trbG
Conjugative transfer protein TrbG.
 
  
 0.942
trbL
Conjugative transfer protein TrbL.
 
  
 0.942
trbI
Conjugative transfer protein TrbI.
 
  
 0.938
trbF
Conjugative transfer protein TrbF.
 
  
 0.937
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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