STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0100Type IV secretion system protein VirD4. (662 aa)    
Predicted Functional Partners:
CSIRO_0099
CopG domain-containing protein.
 
     0.952
CSIRO_0101
Relaxase; Type IV secretory pathway, VirD2 components.
 
   
 0.931
CSIRO_1551
Endonuclease.
   
 
 0.877
trbI
Conjugative transfer protein TrbI.
 
 
 
 0.875
trbE
Conjugative transfer protein TrbE.
 
  
 0.816
trbG
Conjugative transfer protein TrbG.
 
   
 0.812
trbC
Conjugative transfer protein TrbC.
 
   
 0.804
trbJ
Conjugative transfer protein TrbJ.
 
   
 0.800
trbL
Conjugative transfer protein TrbL.
 
   
 0.788
trbF
Conjugative transfer protein TrbF.
 
     0.783
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.