Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0101Relaxase; Type IV secretory pathway, VirD2 components. (587 aa)    
Predicted Functional Partners:
CSIRO_0100
Type IV secretion system protein VirD4.
 
   
 0.938
CSIRO_0099
CopG domain-containing protein.
 
     0.934
CSIRO_0102
Lytic transglycosylase.
 
   
 0.850
CSIRO_0104
Hypothetical protein.
 
     0.813
CSIRO_0106
Hypothetical protein.
 
     0.811
trbE
Conjugative transfer protein TrbE.
 
   
 0.804
trbG
Conjugative transfer protein TrbG.
 
     0.803
trbJ
Conjugative transfer protein TrbJ.
 
     0.803
trbC
Conjugative transfer protein TrbC.
 
   
 0.803
trbI
Conjugative transfer protein TrbI.
 
     0.802
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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