STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0101Relaxase; Type IV secretory pathway, VirD2 components. (587 aa)    
Predicted Functional Partners:
CSIRO_0100
Type IV secretion system protein VirD4.
 
   
 0.931
CSIRO_0099
CopG domain-containing protein.
 
     0.928
CSIRO_0102
Lytic transglycosylase.
 
   
 0.841
trbE
Conjugative transfer protein TrbE.
 
   
 0.817
trbG
Conjugative transfer protein TrbG.
 
     0.801
trbJ
Conjugative transfer protein TrbJ.
 
     0.801
CSIRO_0104
Hypothetical protein.
 
     0.801
CSIRO_0106
Hypothetical protein.
 
     0.801
trbI
Conjugative transfer protein TrbI.
 
     0.800
CSIRO_0105
Replication protein A.
 
     0.796
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.