STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traFProtease TraF; Type IV secretory pathway. (170 aa)    
Predicted Functional Partners:
CSIRO_0104
Hypothetical protein.
 
     0.950
CSIRO_0105
Replication protein A.
 
     0.860
CSIRO_0106
Hypothetical protein.
 
    0.857
CSIRO_0107
Hypothetical protein.
 
     0.812
CSIRO_0101
Relaxase; Type IV secretory pathway, VirD2 components.
 
     0.790
atpE
ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
 0.782
CSIRO_0099
CopG domain-containing protein.
 
     0.775
CSIRO_1818
ATP-dependent DNA ligase.
    
 0.775
CSIRO_0100
Type IV secretion system protein VirD4.
 
     0.774
trbG
Conjugative transfer protein TrbG.
  
     0.773
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.