Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0104Hypothetical protein. (154 aa)    
Predicted Functional Partners:
traF
Protease TraF; Type IV secretory pathway.
 
     0.952
CSIRO_0105
Replication protein A.
 
     0.886
CSIRO_0106
Hypothetical protein.
 
     0.883
CSIRO_0107
Hypothetical protein.
 
     0.842
CSIRO_0101
Relaxase; Type IV secretory pathway, VirD2 components.
 
     0.813
CSIRO_0099
CopG domain-containing protein.
 
     0.809
CSIRO_0100
Type IV secretion system protein VirD4.
 
     0.781
CSIRO_0112
Hypothetical protein.
 
     0.779
CSIRO_0108
Hypothetical protein.
 
     0.778
trbG
Conjugative transfer protein TrbG.
 
     0.772
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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