Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0108Hypothetical protein. (90 aa)    
Predicted Functional Partners:
CSIRO_0107
Hypothetical protein.
 
   
 0.807
CSIRO_0106
Hypothetical protein.
 
     0.787
CSIRO_0099
CopG domain-containing protein.
 
     0.779
CSIRO_0104
Hypothetical protein.
 
     0.778
CSIRO_0101
Relaxase; Type IV secretory pathway, VirD2 components.
  
     0.771
traF
Protease TraF; Type IV secretory pathway.
  
     0.771
CSIRO_0105
Replication protein A.
 
     0.767
trbJ
Conjugative transfer protein TrbJ.
  
     0.763
CSIRO_0100
Type IV secretion system protein VirD4.
 
     0.758
trbL
Conjugative transfer protein TrbL.
  
     0.757
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.