STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0140Putative sterol desaturase. (331 aa)    
Predicted Functional Partners:
CSIRO_1709
Putative membrane protein; Overlaps another CDS with the same product name.
   
 0.907
CSIRO_2281
Squalene--hopene cyclase.
   
 0.907
CSIRO_2278
Phytoene synthase.
  
 0.873
CSIRO_2279
Phytoene synthase.
  
 0.873
CSIRO_2850
Phytoene synthase.
  
 0.873
CSIRO_4112
Hypothetical protein.
   
 0.820
CSIRO_2258
Fatty acid desaturase.
  
 
 0.788
CSIRO_3016
Phosphatidylglycerophosphatase B.
    
 0.743
CSIRO_2234
Cytochrome P450.
   
 0.737
CSIRO_1761
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
    
 0.735
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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