Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_0140Putative sterol desaturase. (331 aa)    
Predicted Functional Partners:
CSIRO_1709
Putative membrane protein; Overlaps another CDS with the same product name.
   
 0.718
CSIRO_2281
Squalene--hopene cyclase.
   
 0.718
CSIRO_2278
Phytoene synthase.
  
 0.656
CSIRO_2279
Phytoene synthase.
  
 0.656
CSIRO_2850
Phytoene synthase.
  
 0.656
CSIRO_2258
Fatty acid desaturase.
  
 
 0.633
CSIRO_4112
Hypothetical protein.
   
 0.607
CSIRO_3016
Phosphatidylglycerophosphatase B.
    
 0.606
CSIRO_0139
Hypothetical protein.
       0.572
rpsS
SSU ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.552
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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