Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0186Oxidoreductase. (313 aa)    
Predicted Functional Partners:
CSIRO_0185
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
  0.820
CSIRO_3397
Aldo/keto reductase family oxidoreductase.
 
0.788
CSIRO_1849
Acetylspermidine deacetylase.
   
  0.718
CSIRO_2199
Aldo/keto reductase.
 
0.676
CSIRO_3016
Phosphatidylglycerophosphatase B.
     
 0.557
rplF
LSU ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
     
  0.540
CSIRO_0184
Hypothetical protein.
       0.535
CSIRO_0746
Polysaccharide deacetylase.
   
  0.534
CSIRO_0748
Polysaccharide deacetylase.
   
  0.534
CSIRO_0317
Hypothetical protein.
    
 0.530
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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