Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0193Hypothetical protein. (258 aa)    
Predicted Functional Partners:
CSIRO_0196
Hypothetical protein.
 
     0.906
CSIRO_0195
RNA polymerase sigma-70 factor; ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.786
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
 0.771
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.686
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.667
tolA-2
TolA protein.
  
 0.647
CSIRO_3901
Hypothetical protein.
  
 0.647
CSIRO_2959
ABC transporter.
  
 
 0.574
CSIRO_0201
Hypothetical protein.
  
     0.561
CSIRO_0194
Hypothetical protein.
       0.551
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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