STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0209MaoC-like dehydratase. (152 aa)    
Predicted Functional Partners:
CSIRO_0208
MaoC-like dehydratase.
 
    
0.812
CSIRO_3432
Indolepyruvate ferredoxin oxidoreductase.
  
  
  0.756
CSIRO_1114
Hypothetical protein.
    
  0.750
CSIRO_2408
Serine protease precursor; Belongs to the peptidase S1C family.
    
  0.750
CSIRO_3463
Serine protease precursor MucD/AlgY; Associated with sigma factor RpoE; Belongs to the peptidase S1C family.
    
  0.750
CSIRO_4020
HtrA protease/chaperone protein; Belongs to the peptidase S1C family.
    
  0.750
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.732
CSIRO_3699
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
  0.716
CSIRO_3945
Serine--glyoxylate aminotransferase.
   
 
  0.696
CSIRO_2425
Biotin carboxylase.
  
 
 0.694
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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