Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0219Hypothetical protein. (87 aa)    
Predicted Functional Partners:
CSIRO_0677
SAM-dependent methyltransferase.
  
  
  0.652
CSIRO_0327
N-methyltransferase.
  
  
  0.647
CSIRO_0272
TPR domain-containing protein.
     
 0.629
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
     
 0.629
CSIRO_3842
Glycosyltransferase.
     
 0.629
CSIRO_3847
Hypothetical protein.
     
 0.629
CSIRO_3861
Hypothetical protein.
     
 0.629
CSIRO_0514
MotA/TolQ/ExbB proton channel family protein; Probably associated with flagella.
  
     0.611
CSIRO_0966
2-octaprenyl-6-methoxyphenol hydroxylase.
  
  
 0.611
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.606
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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