Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
petPHTH-type transcriptional regulator PetP. (176 aa)    
Predicted Functional Partners:
petR
DNA-binding response regulator PetR.
     
 0.830
tal
Transaldolase/ glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
     
  0.599
CSIRO_0231
Branched-chain amino acid aminotransferase.
       0.528
CSIRO_0234
Molybdopterin converting factor subunit 1.
  
     0.469
CSIRO_0639
ATP-dependent DNA helicase.
  
     0.447
CSIRO_4038
Hypothetical protein.
  
     0.419
CSIRO_0921
Hypothetical protein.
  
     0.410
CSIRO_2845
ATP-dependent protease subunit.
  
     0.402
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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