Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0240Ribonuclease T2; Belongs to the RNase T2 family. (240 aa)    
Predicted Functional Partners:
CSIRO_0241
Hypothetical protein.
 
     0.692
rplY
LSU ribosomal protein L25p; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
    
   0.689
rpsU
Ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.
    
   0.689
rpmH
LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.
    
   0.689
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.689
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.689
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.689
rpmA
LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.689
CSIRO_0838
SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
    
   0.689
rpmI
LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.
    
   0.689
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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