Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0317Hypothetical protein. (325 aa)    
Predicted Functional Partners:
CSIRO_0289
DNA helicase.
 
 
 0.981
CSIRO_4234
DNA helicase.
 
 
 0.980
CSIRO_3668
Hypothetical protein.
  
 
 0.968
CSIRO_3728
TolA protein.
  
 
 0.959
CSIRO_1723
Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.958
rpsC
SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.950
CSIRO_3607
Hypothetical protein.
  
 
 0.947
CSIRO_1849
Acetylspermidine deacetylase.
   
 0.938
CSIRO_2234
Cytochrome P450.
 
 
 0.938
CSIRO_0276
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.934
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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