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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0390Hypothetical protein. (207 aa)    
Predicted Functional Partners:
CSIRO_0797
Peptidase M23B precursor.
   
 
 0.822
CSIRO_1808
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.719
CSIRO_2365
Sensory box histidine kinase/response regulator.
    
 0.714
CSIRO_0951
Hypothetical protein.
    
  0.672
CSIRO_0389
Putative esterase.
 
     0.641
CSIRO_1709
Putative membrane protein; Overlaps another CDS with the same product name.
  
     0.597
CSIRO_4274
Putative PAS/PAC sensor protein.
    
  0.584
CSIRO_1207
Hypothetical protein.
     
 0.567
CSIRO_1573
Methyl-accepting chemotaxis protein.
  
   
 0.554
CSIRO_1753
Glycosyl transferase.
 
   
 0.537
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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