Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0399Transcriptional regulator, IclR family. (272 aa)    
Predicted Functional Partners:
CSIRO_0398
Hypothetical protein.
 
  
  0.775
CSIRO_4229
Transcriptional regulator, IclR family.
  
     0.752
CSIRO_0397
Hypothetical protein.
 
  
  0.715
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
  0.653
CSIRO_2925
Allophanate hydrolase 2 subunit 1.
  
    0.636
CSIRO_2924
Allophanate hydrolase 2 subunit 2.
  
    0.611
CSIRO_0396
Salicylate hydroxylase.
     
 0.584
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
   
 0.577
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
 
   
 0.561
CSIRO_1422
P-hydroxybenzoate hydroxylase.
 
   
 0.543
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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