Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wrbAFlavoprotein WrbA. (199 aa)    
Predicted Functional Partners:
CSIRO_3621
NAD(P)H oxidoreductase YRKL/ Putative NADPH-quinone reductase.
    
 0.813
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.
     
  0.768
CSIRO_0326
Non-specific DNA-binding protein Dps / iron-binding ferritin-like antioxidant protein / Ferroxidase; Belongs to the Dps family.
  
  
 0.753
CSIRO_0408
Cupin domain-containing protein; Belongs to the pirin family.
       0.713
CSIRO_2075
Hypothetical protein.
   
    0.692
dedD
DedD protein.
   
  
 0.685
CSIRO_0258
Riboflavin kinase/ FMN adenylyltransferase; Bifunctional; Belongs to the ribF family.
     
  0.657
CSIRO_0410
Hypothetical protein.
       0.601
CSIRO_1451
Hypothetical protein.
     
  0.578
CSIRO_2833
Beta N-acetyl-glucosaminidase.
   
 
 0.526
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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