Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0413Hypothetical protein; Belongs to the UPF0337 (CsbD) family. (122 aa)    
Predicted Functional Partners:
CSIRO_2906
Hypothetical protein.
 
    0.780
CSIRO_3364
Tnosine-5'-monophosphate dehydrogenase.
  
    0.753
CSIRO_4045
Protein of unknown function DUF1328.
  
    0.752
CSIRO_0414
Hypothetical protein.
       0.661
CSIRO_0412
Hypothetical protein.
 
     0.590
CSIRO_0415
Sel1 domain-containing protein.
       0.582
CSIRO_0764
Hypothetical protein.
  
    0.579
CSIRO_4123
Putative bacterioferritin.
  
     0.541
CSIRO_2253
Branched-chain amino acid transport ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.524
CSIRO_0187
Putative exported protein.
  
    0.490
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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