Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CSIRO_0421N-formylglutamate deformylase. (295 aa)    
Predicted Functional Partners:
CSIRO_2219
Prolidase.
  
 
 0.913
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
 0.856
CSIRO_1399
Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.761
CSIRO_2662
NAD-dependent malic enzyme.
     
  0.758
CSIRO_3740
Aerobic fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.758
CSIRO_0014
Amidohydrolase.
  
 
 0.699
CSIRO_0020
Methylthioadenosine deaminase.
  
 
 0.699
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
     
  0.695
CSIRO_0420
Two-component response regulator.
       0.616
phnF
Transcriptional regulator PhnF.
  
 
 0.612
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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